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  <title>Mutate for Digest</title>
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          <a href="index.html"><img src="includes/logo.png" alt="SMS logo" width="144" height="56" border="0" /></a> <!-- INSERT LINKS -->
  <div class="category">
    Format Conversion
  </div>

  <div class="program">
    <a href="combine_fasta.html" onmouseover="self.status='Combines multiple FASTA entries into a single sequence.'; return true;" onmouseout="self.status=' '; return true;">-Combine FASTA</a><br />
    <a href="embl_fasta.html" onmouseover="self.status='Returns the entire sequence contained in an EMBL file in FASTA format.'; return true;" onmouseout="self.status=' '; return true;">-EMBL to FASTA</a><br />
    <a href="embl_feat.html" onmouseover="self.status='Parses the feature table of an EMBL file and returns the feature sequences.'; return true;" onmouseout="self.status=' '; return true;">-EMBL Feature Extractor</a><br />
    <a href="embl_trans.html" onmouseover="self.status='Parses the feature table of an EMBL file and returns the protein translations.'; return true;" onmouseout="self.status=' '; return true;">-EMBL Trans Extractor</a><br />
    <a href="filter_dna.html" onmouseover="self.status='Removes non-DNA characters from text.'; return true;" onmouseout="self.status=' '; return true;">-Filter DNA</a><br />
    <a href="filter_protein.html" onmouseover="self.status='Removes non-protein characters from text.'; return true;" onmouseout="self.status=' '; return true;">-Filter Protein</a><br />
    <a href="genbank_fasta.html" onmouseover="self.status='Returns the entire sequence contained in a GenBank file in FASTA format.'; return true;" onmouseout="self.status=' '; return true;">-GenBank to FASTA</a><br />
    <a href="genbank_feat.html" onmouseover="self.status='Parses the feature table of a GenBank file and returns the feature sequences.'; return true;" onmouseout="self.status=' '; return true;">-GenBank Feature Extractor</a><br />
    <a href="genbank_trans.html" onmouseover="self.status='Parses the feature table of a GenBank file and returns the protein translations.'; return true;" onmouseout="self.status=' '; return true;">-GenBank Trans Extractor</a><br />
    <a href="one_to_three.html" onmouseover="self.status='Converts single letter amino acid codes to three letter codes.'; return true;" onmouseout="self.status=' '; return true;">-One to Three</a><br />
    <a href="range_extract_dna.html" onmouseover="self.status='Reads a list of positions and ranges and returns those parts of a DNA sequence.'; return true;" onmouseout="self.status=' '; return true;">-Range Extractor DNA</a><br />
    <a href="range_extract_protein.html" onmouseover="self.status='Reads a list of positions and ranges and returns those parts of a protein sequence.'; return true;" onmouseout="self.status=' '; return true;">-Range Extractor Protein</a><br />
    <a href="rev_comp.html" onmouseover="self.status='Determines the reverse-complement, reverse, or complement of the sequence you enter.'; return true;" onmouseout="self.status=' '; return true;">-Reverse Complement</a><br />
    <a href="split_codons.html" onmouseover="self.status='Separates bases according to codon position.'; return true;" onmouseout="self.status=' '; return true;">-Split Codons</a><br />
    <a href="split_fasta.html" onmouseover="self.status='Converts a FASTA sequence into multiple sequences.'; return true;" onmouseout="self.status=' '; return true;">-Split FASTA</a><br />
    <a href="three_to_one.html" onmouseover="self.status='Converts three letter amino acid codes to one letter codes.'; return true;" onmouseout="self.status=' '; return true;">-Three to One</a><br />
    <a href="window_extract_dna.html" onmouseover="self.status='Returns DNA sequence segments specified by a position and window size.'; return true;" onmouseout="self.status=' '; return true;">-Window Extractor DNA</a><br />
    <a href="window_extract_protein.html" onmouseover="self.status='Returns protein sequence segments specified by a position and window size.'; return true;" onmouseout="self.status=' '; return true;">-Window Extractor Protein</a>
  </div>

  <div class="category">
    Sequence Analysis
  </div>

  <div class="program">
    <a href="codon_plot.html" onmouseover="self.status='Plots codon frequency (according to the codon table you enter) for each codon in a DNA sequence.'; return true;" onmouseout="self.status=' '; return true;">-Codon Plot</a><br />
    <a href="codon_usage.html" onmouseover="self.status='Returns a standard codon usage table.'; return true;" onmouseout="self.status=' '; return true;">-Codon Usage</a><br />
    <a href="cpg_islands.html" onmouseover="self.status='Returns a list of potential CpG islands.'; return true;" onmouseout="self.status=' '; return true;">-CpG Islands</a><br />
    <a href="dna_mw.html" onmouseover="self.status='Calculates the molecular weight of DNA sequences.'; return true;" onmouseout="self.status=' '; return true;">-DNA Molecular Weight</a><br />
    <a href="dna_pattern.html" onmouseover="self.status='Returns positions of the patterns you enter.'; return true;" onmouseout="self.status=' '; return true;">-DNA Pattern Find</a><br />
    <a href="dna_stats.html" onmouseover="self.status='Returns basic sequence statistics.'; return true;" onmouseout="self.status=' '; return true;">-DNA Stats</a><br />
    <a href="fuzzy_search_dna.html" onmouseover="self.status='Returns sequences that are identical or similar to a query sequence.'; return true;" onmouseout="self.status=' '; return true;">-Fuzzy Search DNA</a><br />
    <a href="fuzzy_search_protein.html" onmouseover="self.status='Returns sequences that are identical or similar to a query sequence.'; return true;" onmouseout="self.status=' '; return true;">-Fuzzy Search Protein</a><br />
    <a href="ident_sim.html" onmouseover="self.status='Accepts aligned sequences in FASTA format and calculates the identity and similarity of each sequence pair.'; return true;" onmouseout="self.status=' '; return true;">-Ident and Sim</a><br />
    <a href="multi_rev_trans.html" onmouseover="self.status='Can be used to predict a DNA sequence in another species using a protein sequence alignment.'; return true;" onmouseout="self.status=' '; return true;">-Multi Rev Trans</a><br />
    <a href="mutate_for_digest.html" onmouseover="self.status='Finds DNA sequences that can easily be converted to a restriction site.'; return true;" onmouseout="self.status=' '; return true;">-Mutate for Digest</a><br />
    <a href="orf_find.html" onmouseover="self.status='Determines the positions of open reading frames.'; return true;" onmouseout="self.status=' '; return true;">-ORF Finder</a><br />
    <a href="pairwise_align_codons.html" onmouseover="self.status='Returns the optimal global alignment for two coding DNA sequences.'; return true;" onmouseout="self.status=' '; return true;">-Pairwise Align Codons</a><br />
    <a href="pairwise_align_dna.html" onmouseover="self.status='Returns the optimal global alignment for two DNA sequences.'; return true;" onmouseout="self.status=' '; return true;">-Pairwise Align DNA</a><br />
    <a href="pairwise_align_protein.html" onmouseover="self.status='Returns the optimal global alignment for two protein sequences.'; return true;" onmouseout="self.status=' '; return true;">-Pairwise Align Protein</a><br />
    <a href="pcr_primer_stats.html" onmouseover="self.status='Returns a report describing PCR primer properties'; return true;" onmouseout="self.status=' '; return true;">-PCR Primer Stats</a><br />
    <a href="pcr_products.html" onmouseover="self.status='Generates PCR products from a template and two primer sequences.'; return true;" onmouseout="self.status=' '; return true;">-PCR Products</a><br />
    <a href="protein_gravy.html" onmouseover="self.status='Returns the grand average of hydropathy value of protein sequences.'; return true;" onmouseout="self.status=' '; return true;">-Protein GRAVY</a><br />
    <a href="protein_iep.html" onmouseover="self.status='Returns the predicted isoelectric point of protein sequences.'; return true;" onmouseout="self.status=' '; return true;">-Protein Isoelectric Point</a><br />
    <a href="protein_mw.html" onmouseover="self.status='Calculates the molecular weight of protein sequences.'; return true;" onmouseout="self.status=' '; return true;">-Protein Molecular Weight</a><br />
    <a href="protein_pattern.html" onmouseover="self.status='Returns positions of the patterns you enter.'; return true;" onmouseout="self.status=' '; return true;">-Protein Pattern Find</a><br />
    <a href="protein_stats.html" onmouseover="self.status='Returns basic sequence statistics.'; return true;" onmouseout="self.status=' '; return true;">-Protein Stats</a><br />
    <a href="rest_digest.html" onmouseover="self.status='Converts the sequence you enter into restriction fragments.'; return true;" onmouseout="self.status=' '; return true;">-Restriction Digest</a><br />
    <a href="rest_summary.html" onmouseover="self.status='Returns the number and positions of restriction sites.'; return true;" onmouseout="self.status=' '; return true;">-Restriction Summary</a><br />
    <a href="rev_trans.html" onmouseover="self.status='Can be used to convert protein into DNA.'; return true;" onmouseout="self.status=' '; return true;">-Reverse Translate</a><br />
    <a href="translate.html" onmouseover="self.status='Returns the translation in the reading frame you specify.'; return true;" onmouseout="self.status=' '; return true;">-Translate</a>
  </div>

  <div class="category">
    Sequence Figures
  </div>

  <div class="program">
    <a href="color_align_cons.html" onmouseover="self.status='Colors a sequence alignment based on sequence conservation.'; return true;" onmouseout="self.status=' '; return true;">-Color Align Conservation</a><br />
    <a href="color_align_prop.html" onmouseover="self.status='Colors a protein alignment based on biochemical properties of residues.'; return true;" onmouseout="self.status=' '; return true;">-Color Align Properties</a><br />
    <a href="group_dna.html" onmouseover="self.status='Numbers and groups DNA according to your specifications.'; return true;" onmouseout="self.status=' '; return true;">-Group DNA</a><br />
    <a href="group_protein.html" onmouseover="self.status='Numbers and groups amino acids according to your specifications.'; return true;" onmouseout="self.status=' '; return true;">-Group Protein</a><br />
    <a href="primer_map.html" onmouseover="self.status='Shows PCR primer annealing sites, translations, and restriction sites.'; return true;" onmouseout="self.status=' '; return true;">-Primer Map</a><br />
    <a href="rest_map.html" onmouseover="self.status='Shows restriction sites and protein translations.'; return true;" onmouseout="self.status=' '; return true;">-Restriction Map</a><br />
    <a href="trans_map.html" onmouseover="self.status='Shows protein translations.'; return true;" onmouseout="self.status=' '; return true;">-Translation Map</a>
  </div>

  <div class="category">
    Random Sequences
  </div>

  <div class="program">
    <a href="mutate_dna.html" onmouseover="self.status='Introduces random mutations into DNA sequences.'; return true;" onmouseout="self.status=' '; return true;">-Mutate DNA</a><br />
    <a href="mutate_protein.html" onmouseover="self.status='Introduces random mutations into protein sequences.'; return true;" onmouseout="self.status=' '; return true;">-Mutate Protein</a><br />
    <a href="random_coding_dna.html" onmouseover="self.status='Generates a random coding sequence of the length you specify.'; return true;" onmouseout="self.status=' '; return true;">-Random Coding DNA</a><br />
    <a href="random_dna.html" onmouseover="self.status='Generates a random DNA sequence of the length you specify.'; return true;" onmouseout="self.status=' '; return true;">-Random DNA Sequence</a><br />
    <a href="random_dna_regions.html" onmouseover="self.status='Replaces regions of the DNA sequences you enter with random bases.'; return true;" onmouseout="self.status=' '; return true;">-Random DNA Regions</a><br />
    <a href="random_protein.html" onmouseover="self.status='Generates a random protein sequence of the length you specify.'; return true;" onmouseout="self.status=' '; return true;">-Random Protein Sequence</a><br />
    <a href="random_protein_regions.html" onmouseover="self.status='Replaces regions of the protein sequences you enter with random residues.'; return true;" onmouseout="self.status=' '; return true;">-Random Protein Regions</a><br />
    <a href="sample_dna.html" onmouseover="self.status='Samples bases from a DNA sequence with replacement.'; return true;" onmouseout="self.status=' '; return true;">-Sample DNA</a><br />
    <a href="sample_protein.html" onmouseover="self.status='Samples residues from a protein sequence with replacement.'; return true;" onmouseout="self.status=' '; return true;">-Sample Protein</a><br />
    <a href="shuffle_dna.html" onmouseover="self.status='Randomly shuffles the DNA sequences you enter.'; return true;" onmouseout="self.status=' '; return true;">-Shuffle DNA</a><br />
    <a href="shuffle_protein.html" onmouseover="self.status='Randomly shuffles the protein sequences you enter.'; return true;" onmouseout="self.status=' '; return true;">-Shuffle Protein</a>
  </div>

  <div class="category">
    Miscellaneous
  </div>

  <div class="program">
    <a href="iupac.html" onmouseover="self.status='IUPAC codes for DNA and protein.'; return true;" onmouseout="self.status=' '; return true;">-IUPAC codes</a><br />
    <a href="genetic_code.html" onmouseover="self.status='The genetic codes used in the Sequence Manipulation Suite.'; return true;" onmouseout="self.status=' '; return true;">-Genetic codes</a><br />
    <a href="browser_compat.html" onmouseover="self.status='Browser compatibility.'; return true;" onmouseout="self.status=' '; return true;">-Browser compatibility</a><br />
    <a href="mirror.html" onmouseover="self.status='Mirror the Sequence Manipulation Suite.'; return true;" onmouseout="self.status=' '; return true;">-Mirror this site</a><br />
    <a href="mirror.html" onmouseover="self.status='Use the Sequence Manipulation Suite off-line.'; return true;" onmouseout="self.status=' '; return true;">-Use this site off-line</a><br />
    <a href="about.html" onmouseover="self.status='About the Sequence Manipulation Suite.'; return true;" onmouseout="self.status=' '; return true;">-About this site</a><br />
    <a href="acknowledgments.html" onmouseover="self.status='Acknowledgments.'; return true;" onmouseout="self.status=' '; return true;">-Acknowledgments</a><br />
    <a href="reference.html" onmouseover="self.status='Citing the Sequence Manipulation Suite.'; return true;" onmouseout="self.status=' '; return true;">-Reference</a>
  </div>
<!-- END INSERT LINKS -->

          <div class="copyright">
            <br />
            The Sequence Manipulation Suite Copyright &copy; 2000, 2004 Paul Stothard. Send questions and comments to stothard@ualberta.ca
          </div>

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            <div class="program">
              <a href="index.html" target="_top">home</a>
            </div>
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        </td><!-- PROGRAM CONTENT -->

        <td class="program">
          <table border="0" cellspacing="0" cellpadding="2">
            <tbody>
              <tr>
                <td class="sms">Sequence Manipulation Suite:</td>
              </tr>

              <tr>
                <td class="title">Mutate for Digest</td>
              </tr>

              <tr>
                <td class="description">
                  Mutate for Digest accepts a DNA sequence as input and searches for regions that can easily be mutated to create a restriction site of interest. The program also displays protein translations so that you can see which reading frames are altered by the proposed mutations. Use Mutate for Digest to find sequences that can be converted to a useful restriction site using PCR or site-directed mutagenesis.<br />
                  <br />

                  <form action="" name="main_form" id="main_form">
                    Paste a raw sequence or one or more FASTA sequences into the text area below. Input limit is 10000 characters.<br />
                    <textarea rows="6" cols="61">
&gt;CDS1
atgtctgattcgctaaatcatccatcgagttctacggtgcatgcagatgatggattcgag
ccaccaacatctccggaagacaacaacaaaaaaccgtctttagaacaaattaaacaggaa
agagaagcgttgtttacggatctattcgcagatcgtcgacgaagcgctcgttctgtgatt
gaagaagctttccaaaacgaactcatgagtgctgaaccagtccagccaaacgtgccgaat
ccacattcgattcccattcgtttccgtcatcaaccagttgctggacctgctcatgatgtt
ttcggagacgcggtgcattcaatttttcaaaaaataatgtccagaggagtgaacgcggat
tatagtcattggatgtcatattggatcgcgttgggaatcgacaaaaaaacacaaatgaac
tatcatatgaaaccgttttgcaaagatacttatgcaactgaaggctccttagaagcgaaa
caaacatttactgataaaatcaggtcagctgttgaggaaattatctggaagtccgctgaa
tattgtgatattcttagcgagaagtggacaggaattcatgtgtcggccgaccaactgaaa
ggtcaaagaaataagcaagaagatcgttttgtggcttatccaaatggacaatacatgaat
cgtggacagagtgacatttcacttcttgcggtgttcgatgggcatggcggacacgagtgc
tctcaatatgcagctgctcatttctgggaagcatggtccgatgctcaacatcatcattca
caagatatgaaacttgacgaactcctagaaaaggctctagaaacattggacgaaagaatg
acagtcagaagtgttcgagaatcttggaaaggtggaaccactgctgtctgctgtgctgtt
gatttgaacactaatcaaatcgcatttgcctggcttggagattcaccaggttacatcatg
tcaaacttggagttccgcaaattcactactgaacactccccgtctgacccggaggaatgt
cgacgagtcgaagaagtcggtggccagatttttgtgatcggtggtgagctccgtgtgaat
ggagtactcaacctgacgcgagcactaggagacgtacctggaagaccaatgatatccaac
aaacctgataccttactgaagacgatcgaacctgcggattatcttgttttgttggcctgt
gacgggatttctgacgtcttcaacactagtgatttgtacaatttggttcaggcttttgtc
aatgaatatgacgtagaagattatcacgaacttgcacgctacatttgcaatcaagcagtt
tcagctggaagtgctgacaatgtgacagtagttataggtttcctccgtccaccagaagac
gtttggcgtgtaatgaaaacagactcggatgatgaagagagcgagctcgaggaagaagat
gacaatgaatag
</textarea><br />

                    <div class="warning">
                      Please check the <a href="browser_compat.html">browser compatibility</a> page before using this program.
                    </div><input type="button" value="Submit" name="main_submit" onclick="mutateForDigest(document)" /> <input type="button" value="Clear" onclick="document.forms[0].elements[0].value = ' '" /> <input type="reset" value="Reset" />

                    <ul>
                      <li>Search for future <select>
                        <option value="/aggcct/ (AatI agg|cct)3">
                          AatI agg|cct
                        </option>

                        <option value="/gacgtc/ (AatII gacgt|c)1">
                          AatII gacgt|c
                        </option>

                        <option value="/tgcgca/ (Acc16I tgc|gca)3">
                          Acc16I tgc|gca
                        </option>

                        <option value="/cgcg/ (AccII cg|cg)2">
                          AccII cg|cg
                        </option>

                        <option value="/tccgga/ (AccIII t|ccgga)5">
                          AccIII t|ccgga
                        </option>

                        <option value="/aacgtt/ (AclI aa|cgtt)4">
                          AclI aa|cgtt
                        </option>

                        <option value="/cacgtg/ (AcvI cac|gtg)3">
                          AcvI cac|gtg
                        </option>

                        <option value="/gtac/ (AfaI gt|ac)2">
                          AfaI gt|ac
                        </option>

                        <option value="/agcgct/ (AfeI agc|gct)3">
                          AfeI agc|gct
                        </option>

                        <option value="/cttaag/ (AflII c|ttaag)5">
                          AflII c|ttaag
                        </option>

                        <option value="/accggt/ (AgeI a|ccggt)5">
                          AgeI a|ccggt
                        </option>

                        <option value="/actagt/ (AhlI a|ctagt)5">
                          AhlI a|ctagt
                        </option>

                        <option value="/gtgcac/ (Alw441 g|tgcac)5">
                          Alw441 g|tgcac
                        </option>

                        <option value="/agct/ (AluI ag|ct)2">
                          AluI ag|ct
                        </option>

                        <option value="/agcgct/ (Aor51HI agc|gct)3">
                          Aor51HI agc|gct
                        </option>

                        <option value="/gggccc/ (ApaI gggcc|c)1">
                          ApaI gggcc|c
                        </option>

                        <option value="/gtgcac/ (ApaLI g|tgcac)5">
                          ApaLI g|tgcac
                        </option>

                        <option value="/ggcgcgcc/ (AscI gg|cgcgcc)6">
                          AscI gg|cgcgcc
                        </option>

                        <option value="/attaat/ (AseI at|taat)4">
                          AseI at|taat
                        </option>

                        <option value="/ggtacc/ (Asp718I g|gtacc)5">
                          Asp718I g|gtacc
                        </option>

                        <option value="/ttcgaa/ (AsuII tt|cgaa)4">
                          AsuII tt|cgaa
                        </option>

                        <option value="/cycgrg/ (AvaI c|ycgrg)5">
                          AvaI c|ycgrg
                        </option>

                        <option value="/tgcgca/ (AviII tgc|gca)3">
                          AviII tgc|gca
                        </option>

                        <option value="/cctagg/ (AvrII c|ctagg)5">
                          AvrII c|ctagg
                        </option>

                        <option value="/tggcca/ (BalI tgg|cca)3">
                          BalI tgg|cca
                        </option>

                        <option selected="selected" value="/ggatcc/ (BamHI g|gatcc)5">
                          BamHI g|gatcc
                        </option>

                        <option value="/atcgat/ (BanIII at|cgat)4">
                          BanIII at|cgat
                        </option>

                        <option value="/ggcgcc/ (BbeI ggcgc|c)1">
                          BbeI ggcgc|c
                        </option>

                        <option value="/cacgtg/ (BbrPI cac|gtg)3">
                          BbrPI cac|gtg
                        </option>

                        <option value="/gcatgc/ (BbuI gcatg|c)1">
                          BbuI gcatg|c
                        </option>

                        <option value="/actagt/ (BcuI a|ctagt)5">
                          BcuI a|ctagt
                        </option>

                        <option value="/tgatca/ (BclI t|gatca)5">
                          BclI t|gatca
                        </option>

                        <option value="/ctag/ (BfaI c|tag)3">
                          BfaI c|tag
                        </option>

                        <option value="/cttaag/ (BfrI c|ttaag)5">
                          BfrI c|ttaag
                        </option>

                        <option value="/atgcat/ (BfrBI atg|cat)3">
                          BfrBI atg|cat
                        </option>

                        <option value="/agatct/ (BglII a|gatct)5">
                          BglII a|gatct
                        </option>

                        <option value="/cctagg/ (BlnI c|ctagg)5">
                          BlnI c|ctagg
                        </option>

                        <option value="/atcgat/ (BseCI at|cgat)4">
                          BseCI at|cgat
                        </option>

                        <option value="/gcgcgc/ (BsePI g|cgcgc)5">
                          BsePI g|cgcgc
                        </option>

                        <option value="/cggccg/ (BseX3I c|ggccg)5">
                          BseX3I c|ggccg
                        </option>

                        <option value="/accggt/ (BshTI a|ccggt)5">
                          BshTI a|ccggt
                        </option>

                        <option value="/tgtaca/ (Bsp1407I t|gtaca)5">
                          Bsp1407I t|gtaca
                        </option>

                        <option value="/ccatgg/ (Bsp19I c|catgg)5">
                          Bsp19I c|catgg
                        </option>

                        <option value="/atcgat/ (BspDI at|cgat)4">
                          BspDI at|cgat
                        </option>

                        <option value="/tccgga/ (BspEI t|ccgga)5">
                          BspEI t|ccgga
                        </option>

                        <option value="/tgtaca/ (BsrGI t|gtaca)5">
                          BsrGI t|gtaca
                        </option>

                        <option value="/gcgcgc/ (BssHII g|cgcgc)5">
                          BssHII g|cgcgc
                        </option>

                        <option value="/cgcg/ (BstUI cg|cg)2">
                          BstUI cg|cg
                        </option>

                        <option value="/atcgat/ (ClaI at|cgat)4">
                          ClaI at|cgat
                        </option>

                        <option value="/tttaaa/ (DraI ttt|aaa)3">
                          DraI ttt|aaa
                        </option>

                        <option value="/cggccg/ (EagI c|ggccg)5">
                          EagI c|ggccg
                        </option>

                        <option value="/gaattc/ (EcoRI g|aattc)5">
                          EcoRI g|aattc
                        </option>

                        <option value="/gatatc/ (EcoRV gat|atc)3">
                          EcoRV gat|atc
                        </option>

                        <option value="/ggcgcc/ (EgeI ggc|gcc)3">
                          EgeI ggc|gcc
                        </option>

                        <option value="/ggccggcc/ (FseI ggccgg|cc)2">
                          FseI ggccgg|cc
                        </option>

                        <option value="/tgcgca/ (FspI tgc|gca)3">
                          FspI tgc|gca
                        </option>

                        <option value="/ggcc/ (HaeIII gg|cc)2">
                          HaeIII gg|cc
                        </option>

                        <option value="/gtyrac/ (HincII gty|rac)3">
                          HincII gty|rac
                        </option>

                        <option value="/aagctt/ (HindIII a|agctt)5">
                          HindIII a|agctt
                        </option>

                        <option value="/gantc/ (HinfI g|antc)4">
                          HinfI g|antc
                        </option>

                        <option value="/gttaac/ (HpaI gtt|aac)3">
                          HpaI gtt|aac
                        </option>

                        <option value="/ccgg/ (HpaII c|cgg)3">
                          HpaII c|cgg
                        </option>

                        <option value="/ggcgcc/ (KasI g|gcgcc)5">
                          KasI g|gcgcc
                        </option>

                        <option value="/ggtacc/ (KpnI ggtac|c)1">
                          KpnI ggtac|c
                        </option>

                        <option value="/ngatcn/ (MboI |gatc)5">
                          MboI |gatc
                        </option>

                        <option value="/caattg/ (MfeI c|aattg)5">
                          MfeI c|aattg
                        </option>

                        <option value="/acgcgt/ (MluI a|cgcgt)5">
                          MluI a|cgcgt
                        </option>

                        <option value="/tggcca/ (MscI tgg|cca)3">
                          MscI tgg|cca
                        </option>

                        <option value="/ttaa/ (MseI t|taa)3">
                          MseI t|taa
                        </option>

                        <option value="/ccgg/ (MspI c|cgg)3">
                          MspI c|cgg
                        </option>

                        <option value="/gccggc/ (NaeI gcc|ggc)3">
                          NaeI gcc|ggc
                        </option>

                        <option value="/ggcgcc/ (NarI gg|cgcc)4">
                          NarI gg|cgcc
                        </option>

                        <option value="/ccatgg/ (NcoI c|catgg)5">
                          NcoI c|catgg
                        </option>

                        <option value="/catatg/ (NdeI ca|tatg)4">
                          NdeI ca|tatg
                        </option>

                        <option value="/gatc/ (NdeII |gatc)4">
                          NdeII |gatc
                        </option>

                        <option value="/gccggc/ (NgoMIV g|ccggc)5">
                          NgoMIV g|ccggc
                        </option>

                        <option value="/gctagc/ (NheI g|ctagc)5">
                          NheI g|ctagc
                        </option>

                        <option value="/gcggccgc/ (NotI gc|ggccgc)6">
                          NotI gc|ggccgc
                        </option>

                        <option value="/tcgcga/ (NruI tcg|cga)3">
                          NruI tcg|cga
                        </option>

                        <option value="/atgcat/ (NsiI atgca|t)1">
                          NsiI atgca|t
                        </option>

                        <option value="/ttaattaa/ (PacI ttaat|taa)3">
                          PacI ttaat|taa
                        </option>

                        <option value="/acatgt/ (PciI a|catgt)5">
                          PciI a|catgt
                        </option>

                        <option value="/ggcc/ (PhoI gg|cc)2">
                          PhoI gg|cc
                        </option>

                        <option value="/gtttaaac/ (PmeI gttt|aaac)4">
                          PmeI gttt|aaac
                        </option>

                        <option value="/cacgtg/ (PmlI cac|gtg)3">
                          PmlI cac|gtg
                        </option>

                        <option value="/ttataa/ (PsiI tta|taa)3">
                          PsiI tta|taa
                        </option>

                        <option value="/ctgcag/ (PstI ctgca|g)1">
                          PstI ctgca|g
                        </option>

                        <option value="/cgatcg/ (PvuI cgat|cg)2">
                          PvuI cgat|cg
                        </option>

                        <option value="/cagctg/ (PvuII cag|ctg)3">
                          PvuII cag|ctg
                        </option>

                        <option value="/gtac/ (RsaI gt|ac)2">
                          RsaI gt|ac
                        </option>

                        <option value="/gagctc/ (SacI gagct|c)1">
                          SacI gagct|c
                        </option>

                        <option value="/ccgcgg/ (SacII ccgc|gg)2">
                          SacII ccgc|gg
                        </option>

                        <option value="/gtcgac/ (SalI g|tcgac)5">
                          SalI g|tcgac
                        </option>

                        <option value="/cctgcagg/ (SbfI cctgca|gg)2">
                          SbfI cctgca|gg
                        </option>

                        <option value="/agtact/ (ScaI agt|act)3">
                          ScaI agt|act
                        </option>

                        <option value="/ggcgcc/ (SfoI ggc|gcc)3">
                          SfoI ggc|gcc
                        </option>

                        <option value="/cccggg/ (SmaI ccc|ggg)3">
                          SmaI ccc|ggg
                        </option>

                        <option value="/tacgta/ (SnaBI tac|gta)3">
                          SnaBI tac|gta
                        </option>

                        <option value="/actagt/ (SpeI a|ctagt)5">
                          SpeI a|ctagt
                        </option>

                        <option value="/gcatgc/ (SphI gcatg|c)1">
                          SphI gcatg|c
                        </option>

                        <option value="/aatatt/ (SspI aat|att)3">
                          SspI aat|att
                        </option>

                        <option value="/gagctc/ (SstI gagct|c)1">
                          SstI gagct|c
                        </option>

                        <option value="/ccgcgg/ (SstII ccgc|gg)2">
                          SstII ccgc|gg
                        </option>

                        <option value="/aggcct/ (StuI agg|cct)3">
                          StuI agg|cct
                        </option>

                        <option value="/atttaaat/ (SwaI attt|aaat)4">
                          SwaI attt|aaat
                        </option>

                        <option value="/tcga/ (TaqI t|cga)3">
                          TaqI t|cga
                        </option>

                        <option value="/ctcgag/ (TliI c|tcgag)5">
                          TliI c|tcgag
                        </option>

                        <option value="/attaat/ (VspI at|taat)4">
                          VspI at|taat
                        </option>

                        <option value="/tctaga/ (XbaI t|ctaga)5">
                          XbaI t|ctaga
                        </option>

                        <option value="/ctcgag/ (XhoI c|tcgag)5">
                          XhoI c|tcgag
                        </option>

                        <option value="/cccggg/ (XmaI c|ccggg)5">
                          XmaI c|ccggg
                        </option>
                      </select> sites.</li>

                      <li>Show <select>
                        <option value="105">
                          105
                        </option>

                        <option value="90">
                          90
                        </option>

                        <option value="75">
                          75
                        </option>

                        <option selected="selected" value="60">
                          60
                        </option>

                        <option value="45">
                          45
                        </option>

                        <option value="30">
                          30
                        </option>
                      </select> bases per line.</li>

                      <li>Show the translation for reading frame <select>
                        <option selected="selected" value="1">
                          1
                        </option>

                        <option value="2">
                          2
                        </option>

                        <option value="3">
                          3
                        </option>

                        <option value="all_three">
                          1, 2, and 3
                        </option>

                        <option value="uppercase">
                          uppercase text
                        </option>

                        <option value="none">
                          none
                        </option>
                      </select></li>

                      <li>Use the <select>
                        <option selected="selected" value="transl_table=1">
                          standard (1)
                        </option>

                        <option value="transl_table=2">
                          vertebrate mitochondrial (2)
                        </option>

                        <option value="transl_table=3">
                          yeast mitochondrial (3)
                        </option>

                        <option value="transl_table=4">
                          mold mitochondrial (4)
                        </option>

                        <option value="transl_table=5">
                          invertebrate mitochondrial (5)
                        </option>

                        <option value="transl_table=6">
                          ciliate nuclear (6)
                        </option>

                        <option value="transl_table=9">
                          echinoderm mitochondrial (9)
                        </option>

                        <option value="transl_table=10">
                          euplotid nuclear (10)
                        </option>

                        <option value="transl_table=11">
                          bacterial (11)
                        </option>

                        <option value="transl_table=12">
                          alternative yeast nuclear (12)
                        </option>

                        <option value="transl_table=13">
                          ascidian mitochondrial (13)
                        </option>

                        <option value="transl_table=14">
                          flatworm mitochondrial (14)
                        </option>

                        <option value="transl_table=15">
                          Blepharisma macronuclear (15)
                        </option>

                        <option value="transl_table=16">
                          chlorophycean mitochondrial (16)
                        </option>

                        <option value="transl_table=21">
                          trematode mitochondrial (21)
                        </option>

                        <option value="transl_table=22">
                          Scenedesmus obliquus mitochondrial (22)
                        </option>

                        <option value="transl_table=23">
                          Thraustochytrium mitochondrial (23)
                        </option>
                      </select> <a href="genetic_code.html">genetic code</a>.</li>
                    </ul>
                  </form>*This page requires JavaScript. See <a href="browser_compat.html">browser compatibility.</a><br />
                  *You can <a href="mirror.html">mirror this page</a> or <a href="mirror.html">use it off-line</a>.<br />
                  <br />

                  <center>
                    <a href="mutate_for_digest.html" target="_blank">new window</a> | <a href="index.html">home</a> | <a href="reference.html">citation</a>
                  </center><span class="version">Tue Jun 15 14:20:11 2010</span>
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